After being bountied, not only do you have to guard against the Federation, but you also have to watch out for other Extraordinary Beings and Gene-Modified Humans who might want to take your life for money. With everyone on guard, it's naturally difficult for these people to unite.
If you want to avoid being bountied, it's simple: join one of the major forces and become a lackey for those big shots, and you'll be exempt.
Strictly speaking, someone like Li You, an Extraordinary Being, is also considered a fugitive by the Federation. It's just that he's not well-known yet, so there's no bounty on him.
This is a blatant scheme. A single decree makes it difficult for civilian Extraordinary Beings to grow strong. Some of the more reckless ones even take pride in having a high bounty, deliberately challenging those with higher bounties to increase their own.